PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17003-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 251aa    MW: 27200.2 Da    PI: 6.928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17003-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-1265107754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  TRIUR3_17003-P1  65 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 107
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-1755125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.76458107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-964107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1364113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-1265112No hitNo description
Gene3DG3DSA:4.10.280.104.0E-1665120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.60E-5183239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MLDDADEDMG SIDASGLNYD SEDGRDVEES GRKDGKESNA NSTVTGGAAA EGKGKKKGMP  60
AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLHK ISNLQNELES  120
SPSMPSLPPT PTSFHPVTPT LPALPSRVKE ELCPSALPSP TGQQPTVEVR LREGRAVNIH  180
MLCPRRPGLV LSAMKAIEAL GLDVQQAVIS CFNGFALDVF KAEQCKDGPG LQPEEIKAVL  240
LQSAGFHLPA M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15472KKKGMPAKNLMAERRRRKK
26673ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591210.0AK359121.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678166.11e-135PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE21e-104ICE1_ARATH; Transcription factor ICE1
TrEMBLM8A1320.0M8A132_TRIUA; Transcription factor ICE1
STRINGMLOC_76805.11e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-91bHLH family protein